For Honeymoon, Amanpulo would be tops. But bear in mind that it will only be the two of you most of the time. You would hardly see any guest or staff. Can get too 'lonely' for some people.
If you are set on Boracay tho, you can choose one of the villas in Shangrila Resort. It is as private as it gets. Shangrila has 2 beaches that you can enjoy. And if you want to venture to white beach, you can do that then go back to your cave. Best of both worlds. I hate crowds so I love the seclusion of Shangrila. It doesnt feel crowded as well. It is a huge property.
There are several threads on this already.
This one is listed under Top Questions.---->
SANTIAGO BAY AND GARDEN RESORT @ Camotes island..the most romantic and peaceful place perfect for honeymooners..
This place reviews very well in Camotes:
Mangodlong Paradise Resort Camotes
that one too..and to make the trip worthwhile dont ever miss to have a private tour with locally called habal-habal(motorbike) to the top 6 tourist destination in camotes...from the historical lake to the enchanting cave called Timubo with cool,crystal clear water..
Forgot to ask the OP what his budget is. Or preferences.
What is your budget or preferences? ;-)
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